Digital Garden
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Digital Garden
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L00 - Homepage
digitalgarden_home
L01 - Work
L03 - data
Data
Patent data
L06 - tools and config
L01 - tools
Alfred for mac
Faiss
Keyboard Maestro
Obsidian - Note taking app
Snakemake - workflow management
Tools for literature reviews
UMAP
igraph
L02 - config
Anaconda setup
Apple configuration
Automate file sharing through cloud
Automate switching conda environment
Github setup
My python stack
SSH setup
Setting up Snakemake
Setting up citation plugin - Obsidian
Setup
Shell setup
L04 - know-how
File organization
Management
llama2
L03 - snippet
Automating conda env switching
Directive - Powerful integration of python scripts into workflow - Snakemake
Paramspace - Enabling grid search at scale - Snakemake
Python tips
Rename files
Wildcard - Abstracting out file names - Snakemake
L01 - projects
detectability limit of graph embedding
notes
Leaky eigenvalue problem
L01 - research note
Code
Ranking similarity
AI fairness
Biases in AIs
Example of AI bias
Fairness metrics
Quantifying and debiasing AI bias
Where does bias come from?
Books
Conceptual spaces - Geometry of thoughts
Community detection
Detectability limit of communities
Computer Science
Fast sampling without replacement
Name disambiguation
Author name disambiguation
Machine learning
EM algorithm
Lasso
Linear Discriminant Analysis
Machine Learning
Noise contrastive learning
Performance metrics
Rethinking training algorithms for ML
Network Science
Belief propagation algorithm
Citation network analysis
Community detection
Community similarity
Configuration model
Disruption index
Ground truth and community detection
History of Network Science
Long term citation model
Missing link prediction
Network Science
Preferential attachment model
Random walk
graph embedding
Clustering graph embedding
Embedding alignment
Graph embedding
node2vec
Science of Science
AI in Science
Evaluating citation prediction
Fairness, integrity and equity of science
Metric fixation
Nobel Turning Challenge
Science of science
Science policy
Scientific Understanding
Scientific mobility
L02 - teaching
Data visualization
datavis
note
1D data
Data types
Design - data vis
Perception - data vis
Tidy Data
L07 - Inbox
tmp
Cuda setup
L08 - Template
Digital Garden Template
PaperTemplate
Network Science
updated: 2022-11-09
Concept
Random walk
Index
Disruption index
Network models
Preferential attachment model
Long term citation model
Configuration model
Community detection
Belief propagation algorithm
Ground truth and community detection
Community similarity
Statistical mechanics of community detection
Interactive graph
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