Digital Garden

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Digital Garden

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L00 - Homepage

digitalgarden_home

L01 - Work

L03 - data

Data

Patent data

L06 - tools and config

L01 - tools

Alfred for mac

Faiss

Keyboard Maestro

Obsidian - Note taking app

Snakemake - workflow management

Tools for literature reviews

UMAP

igraph

L02 - config

Anaconda setup

Apple configuration

Automate file sharing through cloud

Automate switching conda environment

Github setup

My python stack

SSH setup

Setting up Snakemake

Setting up citation plugin - Obsidian

Setup

Shell setup

L04 - know-how

File organization

Management

llama2

L03 - snippet

Automating conda env switching

Directive - Powerful integration of python scripts into workflow - Snakemake

Paramspace - Enabling grid search at scale - Snakemake

Python tips

Rename files

Wildcard - Abstracting out file names - Snakemake

L01 - projects

detectability limit of graph embedding

notes

Leaky eigenvalue problem

L01 - research note

Code

Ranking similarity

AI fairness

Biases in AIs

Example of AI bias

Fairness metrics

Quantifying and debiasing AI bias

Where does bias come from?

Books

Conceptual spaces - Geometry of thoughts

Community detection

Detectability limit of communities

Computer Science

Fast sampling without replacement

Name disambiguation

Author name disambiguation

Machine learning

EM algorithm

Lasso

Linear Discriminant Analysis

Machine Learning

Noise contrastive learning

Performance metrics

Rethinking training algorithms for ML

Network Science

Belief propagation algorithm

Citation network analysis

Community detection

Community similarity

Configuration model

Disruption index

Ground truth and community detection

History of Network Science

Long term citation model

Missing link prediction

Network Science

Preferential attachment model

Random walk

graph embedding

Clustering graph embedding

Embedding alignment

Graph embedding

node2vec

Science of Science

AI in Science

Evaluating citation prediction

Fairness, integrity and equity of science

Metric fixation

Nobel Turning Challenge

Science of science

Science policy

Scientific Understanding

Scientific mobility

L02 - teaching

Data visualization

datavis

note

1D data

Data types

Design - data vis

Perception - data vis

Tidy Data

L07 - Inbox

tmp

Cuda setup

L08 - Template

Digital Garden Template

PaperTemplate

Enter to select

to navigate

ESC to close

Tools for literature reviews

updated: 2022-12-12

Workflow (Obsidian + Zetero)

Setting up citation plugin - Obsidian
Zettelkasten workflow for research papers | Zotero & Obsidian link - YouTube
Complete Walkthrough Zotero & iPad Workflow For Zettelkasten Literature Notes - YouTube
Ruben Dario Palacio

Tools

ResearchRabbit
Obsidian - Note taking app

Interactive graph

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